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In the app game High School Story, there is a mentioned burger place called "Admiral Burger," which seems to be similar to the Krusty Krab because both have a pirate theme to them, a secret recipe, and a competitor that is across the street.
In the online video game Kingdom of Loathing, the player can fight a sponge. One of the messages that displays when it attacks the player is "It smacks you with a piece of its pineapple house. Gah. Who lives in a pineapple under the sea, anyway?", a reference to the theme song. Another reference to the theme song is in one of the messages that displays when it misses, being "It sings its incredibly annoying theme song. You tune it out."
In Plants vs. Zombies: Garden Warfare, there is a map called "Driftwood Shores," which has multiple stores that have a sign that says "Porous Bob's" with a sponge logo design. The sign also says that Porous Bob's sells scuba supplies, a reference to the location of the series, and neck ties, an item of clothing that SpongeBob is regularly seen wearing.
On the online gaming MMOG website Roblox, Roblox officially partnered up with Nickelodeon and made a mini Invincibubble shoulder pal that the player can put on their avatar's shoulder. There was also an Invincibubble hat that the player could wear on top of their avatar's head. It is no longer available since it was specially released for The SpongeBob Movie: Sponge Out of Water.
There are also some fan-made user games based on the show on the site.
In the Scribblenauts games, the player can type "living sea sponge" as a human, then makes a spatula, which will walk up to the spatula and pick it up.
In the game Scribblenauts Unlimited, there is an easter egg from Lost Kingdom of Parentheses that has a rock, a tiki mask, and a pineapple. Tapping on them and pressing 'use' will spawn a starfish, a musical squid, and a sponge respectively.
In the game Splatoon, there was a Splatfest in April2016 that is themed around SpongeBob vs. Patrick. The winner of the Splatfest was Team Patrick, having the most wins over Team SpongeBob, which SpongeBob won in popularity.